共发表学术专著1部（第二作者），学术论文近百篇（章）。长期坚持科普宣传，在国内外科普杂志发表多篇文章，参与创作《史前生物历程》、《热河生物群》、《The Jehol Biota: the Emergence of Feathered Dinosaurs, Beaked Birds and Flowering Plants》；翻译BBC的《与恐龙同行》；为《九龙之死》作科学顾问；参与“科学队长”音频节目《生命是怎样出现的》。
《中国古脊椎动物志：基干下孔类》（李锦玲，刘俊）
Mao F, Jiang S, Liu J et al. , 2025. Convergent evolution of diverse jaw joints in mammaliamorphs. Nature. 10.1038/s41586-025-09572-0
Peng H, Yang W, Wan M et al. , 2025. Refugium amidst ruins: Unearthing the lost flora that escaped the end-Permian mass extinction. Science Advances, 11: eads5614. doi:10.1126/sciadv.ads5614
Chen J, Liu J, 2024. Journey to the east: the oldest tetrapod fauna of east Pangea in early Permian. National Science Review, 11. 10.1093/nsr/nwae249
Liu, J., Abdala, F., Angielczyk, K.D. and Sidor, C.A., 2022. Tetrapod turnover during the Permo-Triassic transition explained by temperature change. Earth-Science Reviews, 224: 103886.
Liu, J., Angielczyk, K.D. and Abdala, F., 2021. Permo-Triassic tetrapods and their climate implications. Global and Planetary Change, 205: 103618.
Liu, J., Yi, J. and Chen, J., 2020. Constraining assembly time of some blocks on eastern margin of Pangea using Permo-Triassic non-marine tetrapod records. Earth Science Reviews, 207: 103215.
Liu, J. and Abdala, F., 2014. The phylogeny and taxonomy of Traversodontidae. In: C.F. Kammerer, K.D. Angielczyk and J. Fröbisch (Editors), Early Evolutionary History of the Synapsida. Springer, New York, pp. 255–279.
Liu, J. and Olsen, P.E., 2010. The phylogenetic relationships of Eucynodontia (Amniota: Synapsida). Journal of Mammalian Evolution, 17(3): 151–176.
Liu, J., Rubidge, B. and Li, J., 2010. A new specimen of Biseridens qilianicus indicates its phylogenetic position as the most basal anomodont. Proceedings of the Royal Society B: Biological Sciences, 277: 285–292.
Liu, J., Rubidge, B. and Li, J., 2009. New basal synapsid supports Laurasian origin for therapsids. Acta Palaeontologica Polonica, 54(3): 393–400.
Liu, J. and Rieppel, O., 2005. Restudy of Anshunsaurus huangguoshuensis (Reptilia: Thalattosauria) from the Middle Triassic of Guizhou, China. American Museum Novitates, 3488: 1–34.
详细论文参见：
https://www.researchgate.net/profile/Jun-Liu-222?ev=hdr_xprf
